Phythophthora capsici Genome Project - Release Notes

Reference Data

Reference sequence data was imported into a relational database along with location based feature information (e.g. CDS annotations, variation records) and external link metadata.

Alignments of the 454 GS20 pyrosequencing and sanger reads were made against the cDNA dataset using GMAP1 v. 2006-04-21. Genomic alignments were made against the draft genome assembly using GMAP v. 2007-06-04. Alignments were kept if they had an identity count of 35 or greater with 95% percent identity.

Gene coordinates on the draft genome were derived using Genewise v. wise2-2-0. Input protein sequences were taken from Phytophthera sojae and Phytophthera ramorum.

Version

This website is released on August 3, 2007 using Alpheus version 2.1.1

1 Wu TD, Watanabe CK. "GMAP: a genomic mapping and alignment program for mRNA and EST sequences", Bioinformatics 2005 May 1;21(9):1859-75.